BIOPEP-UWM: Report

ID 2833
Name Pardaxin 1 from pacific sole Pardachirus pavoninus
sequence
GFFALIPKIISSPLFKTLLSAVGSALSSSGEQE
Function:
Hemolytic
 
Number of residues
33
Activity code
he
Activity :
haemolytic
Chemical mass 3395.8837 Monoisotopic mass 3393.8375
EC50 :
0.00 µM


Bibliographic data:
Authors
Saberwal G., Nagaraj R.
Title
Cell-lytic and antibacterial peptides that act by perturbing the barrier function of membranes: facets of their conformational features, structure-function correlations and membrane-perturbing abilities. BBA, 1197, 109-131, 1994
Year Source
1994 Journal


Additional information:
BIOPEP-UWM database of bioactive peptides

SMILES: NCC(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(C)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)N1[C@@]([H])(CCC1)C(=O)N[C@@]([H])(CCCCN)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)N[C@@]([H])([C@]([H])(CC)C)C(=O)N[C@@]([H])(CO)C(=O)N[C@@]([H])(CO)C(=O)N1[C@@]([H])(CCC1)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(Cc1ccccc1)C(=O)N[C@@]([H])(CCCCN)C(=O)N[C@@]([H])([C@]([H])(O)C)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(CO)C(=O)N[C@@]([H])(C)C(=O)N[C@@]([H])(C(C)C)C(=O)NCC(=O)N[C@@]([H])(CO)C(=O)N[C@@]([H])(C)C(=O)N[C@@]([H])(CC(C)C)C(=O)N[C@@]([H])(CO)C(=O)N[C@@]([H])(CO)C(=O)N[C@@]([H])(CO)C(=O)NCC(=O)N[C@@]([H])(CCC(=O)O)C(=O)N[C@@]([H])(CCC(=O)N)C(=O)N[C@@]([H])(CCC(=O)O)C(=O)O

InChI=1S/C157H252N36O47/c1-23-85(16)124(189-153(235)125(86(17)24-2)188-134(216)96(48-36-38-58-159)172-149(231)116-50-40-60-193(116)156(238)126(87(18)25-3)190-143(225)104(65-83(12)13)175-128(210)88(19)164-136(218)106(67-93-43-31-27-32-44-93)177-141(223)105(168-118(203)69-160)66-92-41-29-26-30-42-92)152(234)185-113(77-199)148(230)186-114(78-200)155(237)192-59-39-49-115(192)150(232)179-102(63-81(8)9)137(219)178-107(68-94-45-33-28-34-46-94)142(224)170-95(47-35-37-57-158)135(217)191-127(91(22)201)154(236)180-103(64-82(10)11)138(220)176-101(62-80(6)7)140(222)182-110(74-196)145(227)166-90(21)130(212)187-123(84(14)15)151(233)163-71-120(205)169-109(73-195)144(226)165-89(20)129(211)174-100(61-79(4)5)139(221)183-111(75-197)147(229)184-112(76-198)146(228)181-108(72-194)131(213)162-70-119(204)167-97(52-55-121(206)207)132(214)171-98(51-54-117(161)202)133(215)173-99(157(239)240)53-56-122(208)209/h26-34,41-46,79-91,95-116,123-127,194-201H,23-25,35-40,47-78,158-160H2,1-22H3,(H2,161,202)(H,162,213)(H,163,233)(H,164,218)(H,165,226)(H,166,227)(H,167,204)(H,168,203)(H,169,205)(H,170,224)(H,171,214)(H,172,231)(H,173,215)(H,174,211)(H,175,210)(H,176,220)(H,177,223)(H,178,219)(H,179,232)(H,180,236)(H,181,228)(H,182,222)(H,183,221)(H,184,229)(H,185,234)(H,186,230)(H,187,212)(H,188,216)(H,189,235)(H,190,225)(H,191,217)(H,206,207)(H,208,209)(H,239,240)/t85-,86-,87-,88-,89-,90-,91+,95-,96-,97-,98-,99-,100-,101-,102-,103-,104-,105-,106-,107-,108-,109-,110-,111-,112-,113-,114-,115-,116-,123-,124-,125-,126-,127-/m0/s1

InChIKey: VCERZAMVTKSUGL-UTDMRTRJSA-N


Antibacterial peptide according to the APD database; the BIOPEP-UWM database of bioactive peptides (ID 9423)


Database reference:
APD: ID AP00641

Hemolytik: ID 3789; 3793

BIOPEP-UWM database of bioactive peptides: ID 9423

SATPdb: ID satpdb13053