{"id":139,"date":"2021-12-18T23:49:46","date_gmt":"2021-12-18T22:49:46","guid":{"rendered":"http:\/\/metachemibio.webgazel.pl\/?page_id=139"},"modified":"2023-01-10T08:57:00","modified_gmt":"2023-01-10T07:57:00","slug":"gene-expression-regulators","status":"publish","type":"page","link":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/gene-expression-regulators\/","title":{"rendered":"Gene expression regulators"},"content":{"rendered":"\n

Gene expression regulators<\/h4>\n\n\n\n
ChemPert<\/a><\/td>Zheng M., Okawa S., Bravo M., Chen F., Mart\u00ednez-Chantar M.-L., del Sol A., ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells. Nucleic Acids Research, 2023, 51, D877\u2013D889. Abstract<\/a><\/td><\/tr>
DGIdb<\/a><\/td>Freshour S. L., Kiwala S., Cotto K. C., Coffman A. C., McMichael J. F., Song J. J., Griffith M., Griffith O. L., Wagner A. H., Integration of the Drug\u2013Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. Nucleic Acids Research, 2021, 49, D1144\u2013D1151. Abstract<\/a><\/td><\/tr>
Drug-Path<\/a><\/td>Zeng H., Qiu C., Cui Q., Drug-Path: a database for drug-induced pathways. Database, 2015, Article No bav061. Abstract<\/a><\/td><\/tr>
EpiDBase<\/a><\/td>Loharch S., Bhutani I., Jain K., Gupta P., Sahoo D. K., Parkesh R., EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database, 2015, Article No bav013. Abstract<\/a><\/td><\/tr>
EWASdb<\/a><\/td>Liu D., Zhao L., Wang Z., Zhou X., Fan X., Li Y., Xu J., Hu S., Niu M., Song X., Li Y., Zuo L., Lei C., Zhang M., Tang G., Huang M., Zhang N., Duan L., Lv H., Zhang M., Li J., Xu L., Kong F., Feng R., Jiang Y., EWASdb: epigenome-wide association study database. Nucleic Acids Research, 2019, 47, D989\u2013D993. Abstract<\/a><\/td><\/tr>
HDACiDB<\/a><\/td>Murugan K., Sangeetha S., Ranjitha S., Vimala A., Al-Sohaibani S., Rameshkumar G., HDACiDB: a database for histone deacetylase inhibitors. Drug Design, Development and Therapy, 2015, 9, 2257\u20132264. Abstract<\/a><\/td><\/tr>
HEDD<\/a><\/td>Qi Y., Wang D., Wang D., Jin T., Yang L., Wu H., Li Y., Zhao J., Du F., Song M., Wang R., HEDD: the human epigenetic drug database. Database, 2016, Article No baw159. Abstract<\/a><\/td><\/tr>
HEMD<\/a><\/td>Huang Z., Jiang H., Liu X., Chen Y., Wong J., Wang Q., Huang W., Shi T., Zhang J., HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PLoS ONE, 2012, 7, Article No e39917. Abstract<\/a><\/td><\/tr>
HerDing<\/a><\/td>Choi W., Choi C.-H., Kim Y. R., Kim S.-J., Na C.-S., Lee H., HerDing: herb recommendation system to treat diseases using genes and chemicals. Database, 2016, Article No baw011. Abstract<\/a><\/td><\/tr>
HIPHOP<\/a><\/td>Lee A. Y., St.Onge R. P., Proctor M. J., Wallace I. M., Nile A. H., Spagnuolo P. A., Jitkova Y., Gronda M., Wu Y., Kim M. K., Cheung-Ong K., Torres N. P., Spear E. D., Han M. K. L., Schlecht U., Suresh S., Duby G., Heisler L. E., Surendra A., Fung E., Urbanus M. L., Gebbia M., Lissina E., Miranda M., Chiang J. H., Aparicio A. M., Zeghouf M., Davis R. W., Cherfils J., Boutry M., Kaiser C. A., Cummins C. L., Trimble W. S., Brown G. W., Schimmer A. D., Bankaitis V. A., Nislow C., Bader G. D., Giaever G., Mapping the cellular response to small molecules using chemogenomic fitness signatures. Science, 2014, 344(6180), 208-211. Abstract<\/a><\/td><\/tr>
NALDB<\/a><\/td>Mishra S. K., Kumar A., NALDB: nucleic acid ligand database for small molecules targeting nucleic acid. Database, 2016, Article No baw002. Abstract<\/a><\/td><\/tr>
SM2miR<\/a><\/td>Liu X., Wang S., Meng F., Wang J., Zhang Y., Dai E., Yu X., Li X., Jiang W., SM2miR: a database of the experimentally validated small molecules\u2019 effects on microRNA expression. Bioinformatics, 2013, 29, 409-411. Abstract<\/a><\/td><\/tr>
ToxDB<\/a><\/td>Hardt C., Beber M. E., Rasche A., Kamburov A., Hebels D. G., Kleinjans J. C., Herwig R., ToxDB: pathway-level interpretation of drug-treatment data. Database, 2016, Article No baw052. Abstract<\/a><\/td><\/tr>
Toxygates<\/a><\/td>Nystr\u00f6m-Persson J., Igarashi Y., Ito M., Morita M., Nakatsu N., Yamada H., Mizuguchi K., 2013, Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platform. Bioinformatics, 2013, 29, 3080-3086. Abstract<\/a><\/td><\/tr>
TR-DB<\/a><\/td>Hu Y., Callebert P., Vandemoortel I., Nguyen L., Audenaert D., Verschraegen L., Vandenbussche F., Van Der Straeten D., TR-DB: An open-access database of compounds affecting the ethylene-induced triple response in Arabidopsis. Plant Physiology and Biochemistry, 2014, 75, 128-137. Abstract<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Gene expression regulators ChemPert Zheng M., Okawa S., Bravo M., Chen F., Mart\u00ednez-Chantar M.-L., del Sol A., ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells. Nucleic Acids Research, 2023, 51, D877\u2013D889. Abstract DGIdb Freshour S. L., Kiwala S., Cotto K. C., Coffman A. C., McMichael J. F., Song J. J., Griffith M.,…<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_lmt_disableupdate":"no","_lmt_disable":"no","_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"left","_kad_post_sidebar_id":"sidebar-primary","_kad_post_content_style":"boxed","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-139","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/139","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/comments?post=139"}],"version-history":[{"count":4,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/139\/revisions"}],"predecessor-version":[{"id":516,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/139\/revisions\/516"}],"wp:attachment":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/media?parent=139"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}