{"id":145,"date":"2021-12-18T23:55:10","date_gmt":"2021-12-18T22:55:10","guid":{"rendered":"http:\/\/metachemibio.webgazel.pl\/?page_id=145"},"modified":"2025-06-25T14:34:00","modified_gmt":"2025-06-25T12:34:00","slug":"individual-compound-classes","status":"publish","type":"page","link":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/individual-compound-classes\/","title":{"rendered":"Individual compound classes"},"content":{"rendered":"\n<h4 class=\"wp-block-heading has-medium-font-size\">Individual compound classes<\/h4>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table><tbody><tr><td><a target=\"_blank\" href=\"http:\/\/www.atipd.ethz.ch\/\" rel=\"noreferrer noopener\">AtIPD<\/a><\/td><td>Vranov\u00e1 E., Hirsch-Hoffmann M., Gruissem W., AtIPD: A curated database of Arabidopsis isoprenoid pathway models and genes for isoprenoid network analysis. Plant Physiology, 2011, 156, 1655\u20131660.&nbsp;<a target=\"_blank\" href=\"http:\/\/www.plantphysiol.org\/content\/156\/4\/1655.Abstractfull\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a target=\"_blank\" href=\"http:\/\/crdd.osdd.net\/raghava\/biadb\/\" rel=\"noreferrer noopener\">BIAdb<\/a><\/td><td>Singla D., Sharma A., Kaur J., Panwar B., Raghava G. P. S., BIAdb: A curated database of benzylisoquinoline alkaloids. BMC Pharmacology, 2010, 10, Article No 4.&nbsp;<a target=\"_blank\" href=\"http:\/\/uwm.edu.pl\/metachemibio\/administrator\/index.php?option=com_content&amp;sectionid=-1&amp;task=edit&amp;cid[]=26\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/candactcftr.ams.med.uni-goettingen.de\/\" target=\"_blank\" rel=\"noreferrer noopener\">CandActCFTR<\/a><\/td><td>Provider: Universit\u00e4tzmedizin G\u00f6ttingen<\/td><\/tr><tr><td><a href=\"http:\/\/carotenoiddb.jp\/\" target=\"_blank\" rel=\"noreferrer noopener\">Carotenoids Database<\/a><\/td><td>Yabuzaki J., Carotenoids Database: structures, chemical fingerprints and distribution among organisms. Database, 2017, Article No bax004.&nbsp;<a href=\"https:\/\/academic.oup.com\/database\/article\/3053444\/Carotenoids-Database-structures-chemical\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/srampogu.shinyapps.io\/CBPDdb_Revised\/\" target=\"_blank\" rel=\"noreferrer noopener\">CBPDdb<\/a><\/td><td>Rampogu S., Shaik M. R., Khan M., Khan M., Oh T. H., Shaik B., CBPDdb: a curated database of compounds derived from coumarin\u2013benzothiazole\u2013pyrazole. Database, 2023, Article No baad062. <a href=\"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baad062\/7272770?login=true\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/omics.biol.ntnu.edu.tw\/ChemiRs\/\" target=\"_blank\" rel=\"noreferrer noopener\">ChemiRs<\/a><\/td><td>Su E. C.-Y., Chen Y.-S., Tien Y.-C., Liu J., Ho B.-C., Yu S.-L., Singh S., ChemiRs: a web application for microRNAs and chemicals. BMC Bioinformatics, 2016, 17, Article No 167.&nbsp;<a href=\"https:\/\/bmcbioinformatics.biomedcentral.com\/articles\/10.1186\/s12859-016-1002-0\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/compbio.sjtu.edu.cn\/services\/clc-db\" target=\"_blank\" rel=\"noreferrer noopener\">CLC-DB<\/a><\/td><td>Yu G., Yu K., Wang X., Zhang C., Luo Y., Huo X., Yang Y., Clc\u2011db: an open\u2011source online database of chiral ligands and catalysts. Journal of Cheminformatics, 2025, 17, Article No 45. <a href=\"https:\/\/jcheminf.biomedcentral.com\/articles\/10.1186\/s13321-025-00991-9\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a target=\"_blank\" href=\"http:\/\/www.crdb.in\/\" rel=\"noreferrer noopener\">CRDB<\/a><\/td><td>Kumar A., Chetia H., Sharma S., Kabiraj D., Talukdar N. C., Bora U., Curcumin Resource Database. Database, 2015, Article No bav070.&nbsp;<a target=\"_blank\" href=\"http:\/\/database.oxfordjournals.org\/content\/2015\/bav070.abstract\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/ferr.gulab.org.cn\/\" target=\"_blank\" rel=\"noreferrer noopener\">FerroLigandDB<\/a><\/td><td>Lin Y., Xu J., Gu Q., FerroLigandDB: A ferroptosis ligand database of structure\u2013activity relations. Journal of Chemical Information and Modeling, 2024, 64, 5052-5062. <a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.4c00525\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/fluobase.siochemdb.com\/\" target=\"_blank\" rel=\"noreferrer noopener\">FluoBase<\/a><\/td><td>Mulka R., Su D., Huang W.-S., Zhang L., Huang H., Lai X., Yao Li Y., Xue X.-S., FluoBase: a fluorinated agents database. Journal of Cheminformatics, 2025, 17, 19. <a href=\"https:\/\/jcheminf.biomedcentral.com\/articles\/10.1186\/s13321-025-00949-x\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"https:\/\/bioinfo.imtech.res.in\/bvs\/hspmdb\/index.php\" target=\"_blank\" rel=\"noreferrer noopener\">HSPMdb<\/a><\/td><td>Singh P., Unik B., Puri A., Nagpal G., Singh B., Gautam A., Sharma D., HSPMdb: a computational repository of heat shock protein modulators. Database, 2020, Article No baaa003.&nbsp;<a href=\"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baaa003\/5743069\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/clri.res.in\/subramanian\/databases\/mmpi\/index.php\" target=\"_blank\" rel=\"noreferrer noopener\">MMpI<\/a><\/td><td>Muvva C., Patra S., Venkatesan S., MMpI: A wide range of available compounds of matrix metalloproteinase inhibitors. PLoS ONE, 2016, 11, Article No e0159321.&nbsp;<a href=\"http:\/\/journals.plos.org\/plosone\/article?id=10.1371\/journal.pone.0159321\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a target=\"_blank\" href=\"http:\/\/www.organoborons.com\/\" rel=\"noreferrer noopener\">Organoboron<\/a><\/td><td>&nbsp;<\/td><\/tr><tr><td><a href=\"http:\/\/www.pherobase.com\/database\/compound\/compounds-index.php\" target=\"_blank\" rel=\"noreferrer noopener\">Pherobase<\/a><\/td><td>Author: Ashraf M. El-Sayed<\/td><\/tr><tr><td><a target=\"_blank\" href=\"http:\/\/www.zirchrom.com\/organic.htm\" rel=\"noreferrer noopener\">pKa values of acids and bases<\/a><\/td><td>Provider: ZirChrom Separations Inc.<\/td><\/tr><tr><td><a href=\"http:\/\/bioinfo.imtech.res.in\/servers\/procardb\/\" target=\"_blank\" rel=\"noreferrer noopener\">ProCarDB<\/a><\/td><td>Nupur L. N. U., Vats A., Dhanda S. K., Raghava G. P. S., Pinnaka A. K., Kumar A., ProCarDB: a database of bacterial carotenoids. BMC Microbiology, 2016, 16, Article No 96.&nbsp;<a href=\"https:\/\/bmcmicrobiol.biomedcentral.com\/articles\/10.1186\/s12866-016-0715-6\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/plant-scc.org\/\" target=\"_blank\" rel=\"noreferrer noopener\">SuCComBase<\/a><\/td><td>Harun S., Abdullah-Zawawi M.-R., A-Rahman M. R. A., Muhammad N. A. N., Mohamed-Hussein Z.-A., SuCComBase: a manually curated repository of plant sulfur-containing compounds. Database, 2019, Article No baz021.&nbsp;<a href=\"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baz021\/5353919\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/terokit.qmclab.com\/index.html\" target=\"_blank\" rel=\"noreferrer noopener\">TeroKit<\/a><\/td><td>Zeng T., Liu Z., Zhuang J., Jiang Y., He W., Diao H., Lv N., Jian Y., Liang D., Qiu Y., Zhang R., Zhang F., Tang X., Wu R., TeroKit: A database-driven web server for terpenome research. Journal of Chemical Information and Modeling, 2020, 60, 2082-2090.&nbsp;<a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.0c00141\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a href=\"http:\/\/www.tpcn.pro\/\" target=\"_blank\" rel=\"noreferrer noopener\">TPCN<\/a><\/td><td>Li W., Chen Y., Yang R., Hu Z., Wei S., Hu S., Xiong X., Wang M., Lubeiny A., Li X., Feng M., Dong S., Xie X., Nie C., Zhang J., Luo Y., Zhou Y., Liu R., Pan J., Kong D.-X., Hu X., A terpenoids database with the chemical content as a novel agronomic trait. Database, 2024, Article No baae027. <a href=\"https:\/\/academic.oup.com\/database\/article\/doi\/10.1093\/database\/baae027\/7679810\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><tr><td><a target=\"_blank\" href=\"http:\/\/www.symech.it\/index.asp?catID=31&amp;lang=en\" rel=\"noreferrer noopener\">ZINClick<\/a><\/td><td>Levr\u00e9 D., Arcisto C., Mercalli V., Massarotti A., ZINClick v.18: expanding chemical space of 1,2,3-triazoles. Journal of Chemical Information and Modeling, 2019, 59, 1697-1702.&nbsp;<a href=\"https:\/\/pubs.acs.org\/doi\/10.1021\/acs.jcim.8b00615\" target=\"_blank\" rel=\"noreferrer noopener\">Abstract<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p><\/p>\n","protected":false},"excerpt":{"rendered":"<p>Individual compound classes AtIPD Vranov\u00e1 E., Hirsch-Hoffmann M., Gruissem W., AtIPD: A curated database of Arabidopsis isoprenoid pathway models and genes for isoprenoid network analysis. Plant Physiology, 2011, 156, 1655\u20131660.&nbsp;Abstract BIAdb Singla D., Sharma A., Kaur J., Panwar B., Raghava G. P. S., BIAdb: A curated database of benzylisoquinoline alkaloids. BMC Pharmacology, 2010, 10, Article&#8230;<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_lmt_disableupdate":"no","_lmt_disable":"no","_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"left","_kad_post_sidebar_id":"sidebar-primary","_kad_post_content_style":"boxed","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-145","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/145","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/comments?post=145"}],"version-history":[{"count":6,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/145\/revisions"}],"predecessor-version":[{"id":1114,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/145\/revisions\/1114"}],"wp:attachment":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/media?parent=145"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}