{"id":55,"date":"2021-12-16T20:28:28","date_gmt":"2021-12-16T19:28:28","guid":{"rendered":"http:\/\/metachemibio.webgazel.pl\/?page_id=55"},"modified":"2026-04-14T10:26:00","modified_gmt":"2026-04-14T08:26:00","slug":"amino-acids-and-peptides","status":"publish","type":"page","link":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/amino-acids-and-peptides\/","title":{"rendered":"Amino acids and peptides"},"content":{"rendered":"\n

Amino acids and peptides<\/strong><\/h4>\n\n\n\n
AAindex<\/a><\/td>Kawashima S., Pokarowski P., Pokarowska M., Kolinski A., Katayama T., Kanehisa M., AAindex: amino acid index database, progress report 2008. Nucleic Acids Research, 2008, 36, D202-D205. Abstract<\/a><\/td><\/tr>
AHTPDB<\/a><\/td>Kumar R., Chaudhary K., Sharma M., Nagpal G., Chauhan J. S., Singh S., Gautam A., Raghava G. P. S., AHTPDB: a comprehensive platform for analysis and presentation of antihypertensive peptides. Nucleic Acids Research, 2015, 43, D956-D962. Abstract<\/a><\/td><\/tr>
Amino Acids Guide<\/a><\/td><\/td><\/tr>
AminoADB<\/a><\/td>Author: Beaven Manjengwa<\/td><\/tr>
Antimicrobial Combination Networks<\/a><\/td>Jorge P., P\u00e9rez-P\u00e9rez M., P\u00e9rez Rodr\u00edguez G., Fdez-Riverola F., Pereira M. O., Louren\u00e7o A., Construction of antimicrobial peptide-drug combination networks from scientific literature based on a semi-automated curation workflow. Database, 2016, Article No baw143. Abstract<\/a><\/td><\/tr>
AODB Peptides<\/a><\/td>Deng W., Chen Y., Sun X., Wang L., AODB: A comprehensive database for antioxidants including small molecules, peptides and proteins. Food Chemistry, 2023, 418, Article No 135992. Abstract<\/a><\/td><\/tr>
ATB Amino acids<\/a><\/td>Malde A. K., Zuo L., Breeze M., Stroet M., Poger D., Nair P. C., Oostenbrink C., Mark A. E., An Automated force field Topology Builder (ATB) and repository: version 1.0. Journal of Chemical Theory and Computation, 2011, 7, 4026-4037. Abstract<\/a><\/td><\/tr>
BIOPEP-UWM<\/a><\/td>Minkiewicz P., Iwaniak A., Darewicz M., BIOPEP-UWM database of bioactive peptides: current opportunities. International Journal of Molecular Sciences, 2019, 20, Article No 5978. Abstract<\/a><\/td><\/tr>
Brainpeps<\/a><\/td>Van Dorpe S., Bronselaer A., Nielandt J., Stalmans S., Wynendaele E., Audenaert K., Van De Wiele C., Burvenich C., Peremans K., Hsuchou H., De Tr\u00e9 G., De Spiegeleer B., Brainpeps: The blood-brain barrier peptide database. Brain Structure and Function, 2012, 217, 687-718. Abstract<\/a><\/td><\/tr>
CancerPPD<\/a><\/td>Tyagi A., Tuknait A., Anand P., Gupta S., Sharma M., Mathur D., Joshi A., Singh S., Gautam A., Raghava G. P. S., CancerPPD: a database of anticancer peptides and proteins. Nucleic Acids Research, 2015, 43, D837\u2013D843. Abstract<\/a><\/td><\/tr>
CancerPPD2<\/a><\/td>Chauhan M., Gupta A., Tomer R., Raghava G. P. S., CancerPPD2: an updated repository of anticancer peptides and proteins. Database, 2025, Article No baaf030. Abstract<\/a><\/td><\/tr>
ClusterMine360<\/a><\/td>Conway K. R., Boddy C. N., ClusterMine360: A database of microbial PKS\/NRPS biosynthesis. Nucleic Acids Research, 2013, 41, D402-D407. Abstract<\/a><\/td><\/tr>
ConjuPepDB<\/a><\/td>Balogh B., Iv\u00e1nczi M., Nizami B., Beke-Somfai T., M\u00e1ndity I. M., ConjuPepDB: a database of peptide\u2013drug conjugates. Nucleic Acids Research, 2021, 49, D1102\u2013D1112. Abstract<\/a><\/td><\/tr>
CPPsite3<\/a><\/td>Bajiya N., Najrin S., Kumar P., Choudhury S., Tomer R., Raghava G. P. S., CPPsite3: An updated large repository of experimentally validated cell-penetrating peptides. Drug Discovery Today, 2025, 30, 104421. Abstract<\/a><\/td><\/tr>
CycPeptMPDB<\/a><\/td>Li J., Yanagisawa K., Sugita M., Fujie T., Ohue M., Akiyama Y., CycPeptMPDB: a comprehensive database of membrane permeability of cyclic peptides. Journal of Chemical Information and Modeling, 2023, 63, 2240\u20132250. Abstract<\/a><\/td><\/tr>
DFBP<\/a><\/td>Qin D., Bo W., Zheng X., Hao Y., Li B., Zheng J., Liang G., DFBP: a comprehensive database of food-derived bioactive peptides for peptidomics research. Bioinformatics, 2022, 38, 3275\u20133280. Abstract<\/a><\/td><\/tr>
Hemolytik<\/a><\/td>Gautam A., Chaudhary K., Singh S., Joshi A., Anand P., Tuknait A., Mathur D., Varshney G. C., Raghava G. P. S., Hemolytik: a database of experimentally determined hemolytic and non-hemolytic peptides. Nucleic Acids Research, 2014, 42, D444\u2013D449. Abstract<\/a><\/td><\/tr>
Hemolytik 2.0<\/a><\/td>Singh A., Kavin Raj S. A., Rathore A. S., Raghava G. P. S., Hemolytik 2: an updated database of hemolytic peptides and proteins. Chemical Research in Toxicology, 2026, 39, 208\u2013215. Abstract<\/a><\/td><\/tr>
ImmunoSPdb<\/a><\/td>Usmani S. S., Agrawal P., Sehgal M., Patel P. K., Raghava G. P. S., ImmunoSPdb: an archive of immunosuppressive peptides. Database, 2019, Article No baz012. Abstract<\/a><\/td><\/tr>
iNCLusive<\/a><\/td>Icking L.-S., Riedlberger A. M., Krause F., Widder J., Frederiksen A. S., Stockert F., Sp\u00e4dt M., Edel N., Armbruster D., Forlani F., Franchini S., Kaas P., Konak B. M. K., Krier F., Lefebvre M., Mazraeh D., Ranniger J., Gerstenecker J., Gescher P., Voigt K., Salavei P., Gensch N., Di Ventura B., \u00d6zt\u00fcrk M. A., iNClusive: a database collecting useful information on non-canonical amino acids and their incorporation into proteins for easier genetic code expansion implementation. Nucleic Acids Research, 2024, 52, D476\u2013D482. Abstract<\/a><\/td><\/tr>
KEGG peptides<\/a><\/td>Kanehisa M., Furumichi M., Sato Y., Matsuura Y., Ishiguro-Watanabe M., KEGG: biological systems database as a model of the real world. Nucleic Acids Research, 2025, 53, D672\u2013D677. Abstract<\/a><\/td><\/tr>
Norine<\/a><\/td>Flissi A., Ricart E., Campart C., Chevalier M., Dufresne Y., Michalik J., Jacques P., Flahaut C., Lisacek F., Lecl\u00e8re V., Pupin M., Norine: update of the nonribosomal peptide resource. Nucleic Acids Research, 2020, 48, D465\u2013D469. Abstract<\/a><\/td><\/tr>
ParaPep<\/a><\/td>Mehta D., Anand P., Kumar V., Joshi A., Mathur D., Singh S., Tuknait A., Chaudhary K., Gautam S. K., Gautam A., Varshney G. C., Raghava G. P. S., ParaPep: a web resource for experimentally validated antiparasitic peptide sequences and their structures. Database, 2014, Article No bau051. Abstract<\/a><\/td><\/tr>
PDCdb<\/a><\/td>Sun X., Li H., Chen Z., Zhang Y., Wei Z., Xu H., Liao Y., Jiang W., Ge Y., Zheng L., Li L., Wu Y., Luo M., Fang L., Dong X., Xiao M., Han L., Jia Q., Zhu F., PDCdb: the biological activity and pharmaceutical information of peptide\u2013drug conjugate (PDC). Nucleic Acids Research, 2025, 53, D1476\u2013D1485. Abstract<\/a><\/td><\/tr>
PEPlife<\/a><\/td>Mathur D., Prakash S., Anand P., Kaur H., Agrawal P., Mehta A., Kumar R., Singh S., Raghava G. P. S., PEPlife: a repository of the halflife of peptides. Scientific Reports, 2016, 6, Article No 36617. Abstract<\/a><\/td><\/tr>
PEPlife2<\/a><\/td>Alam U., Chaudhary K., Kumar N., Tomer R., Patiyal S., Raghava G. P. S., PEPlife2: an updated repository of the half-life of peptides and proteins. Immuno, 2026, 6, Article No 26. Abstract<\/a><\/td><\/tr>
Peptaloid<\/a><\/td>Behera B. P., Naik H., Konkimalla V. B., Peptaloid: A comprehensive database for exploring peptide alkaloid. Journal of Chemical Information and Modeling, 64, 8387\u20138395. Abstract<\/a><\/td><\/tr>
PepTherDia<\/a><\/td>D\u2019Aloisio V., Dognini P., Hutcheon G. A., Coxon C. R., PepTherDia: database and structural composition analysis of approved peptide therapeutics and diagnostics. Drug Discovery Today, 2021, 26, 1409-1419. Abstract<\/a><\/td><\/tr>
Quorumpeps<\/a><\/td>Wynendaele E., Bronselaer A., Nielandt J., D\u2019Hondt M., Stalmans S., Bracke N., Verbeke F., Van De Wiele C., De Tr\u00e9 G., De Spiegeleer B., Quorumpeps database: chemical space, microbial origin and functionality of quorum sensing peptides. Nucleic Acids Research, 2013, 41, D655\u2013D659. Abstract<\/a><\/td><\/tr>
SAPdb<\/a><\/td>Mathur D., Kaur H., Dhall A., Sharma N., Raghava G. P. S., SAPdb: A database of short peptides and the corresponding nanostructures formed by self-assembly. Computers in Biology and Medicine, 2021, 133, Article No 104391. Abstract<\/a><\/td><\/tr>
SwissSidechain<\/a><\/td>Gfeller D., Michielin O., Zoete V., SwissSidechain: a molecular and structural database of non-natural sidechains. Nucleic Acids Research, 2013, 41, D327\u2013D332. Abstract<\/a><\/td><\/tr>
TopicalPdb<\/a><\/td>Mathur D., Mehta A., Firmal P., Bedi G., Sood C., Gautam A., Raghava G. P. S., TopicalPdb: A database of topically delivered peptides. PLoS ONE, 2018, 13, Article No e0190134. Abstract<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Amino acids and peptides AAindex Kawashima S., Pokarowski P., Pokarowska M., Kolinski A., Katayama T., Kanehisa M., AAindex: amino acid index database, progress report 2008. Nucleic Acids Research, 2008, 36, D202-D205. Abstract AHTPDB Kumar R., Chaudhary K., Sharma M., Nagpal G., Chauhan J. S., Singh S., Gautam A., Raghava G. P. S., AHTPDB: a comprehensive platform…<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_lmt_disableupdate":"no","_lmt_disable":"no","_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"left","_kad_post_sidebar_id":"sidebar-primary","_kad_post_content_style":"boxed","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-55","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/55","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/comments?post=55"}],"version-history":[{"count":28,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/55\/revisions"}],"predecessor-version":[{"id":522251,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/55\/revisions\/522251"}],"wp:attachment":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/media?parent=55"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}