{"id":97,"date":"2021-12-16T21:57:37","date_gmt":"2021-12-16T20:57:37","guid":{"rendered":"http:\/\/metachemibio.webgazel.pl\/?page_id=97"},"modified":"2025-02-21T10:46:00","modified_gmt":"2025-02-21T09:46:00","slug":"carbohydrates","status":"publish","type":"page","link":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/carbohydrates\/","title":{"rendered":"Carbohydrates"},"content":{"rendered":"\n

Carbohydrates<\/h4>\n\n\n\n
Bacterial CSDB<\/a><\/td>Toukach P. V., Bacterial Carbohydrate Structure Database 3: principles and realization. Journal of Chemical Information and Modeling, 2011, 51, 159\u2013170. Abstract<\/a><\/td><\/tr>
CarbBank<\/a><\/td>Doubet, S.; Albersheim, P. Letter to the glyco-forum: Carbbank. Glycobiology, 1992, 2, 505. Abstract<\/a><\/td><\/tr>
CSDB<\/a><\/td>Toukach P. V., Egorova K. S., Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. Scientific Data, 2022, 9, Article No 131. Abstract<\/a><\/td><\/tr>
Cyclo-lib<\/a><\/td>Mixcoha E., Rosende R., Garcia-Fandino R., Pi\u00f1eiro \u00c1., Cyclo-lib: a database of computational molecular dynamics simulations of cyclodextrins. Bioinformatics, 2016, 32, 3371-3373. Abstract<\/a><\/td><\/tr>
DIONYSUS<\/a><\/td>Gheeraert A., Bailly T., Ren Y., Hamraoui A., Te J., Vander Meersche Y., Cretin G., Lin R. L. F., Gelly J.-C., P\u00e9rez S., Guyon F., Galochkina T., 2025, DIONYSUS: a database of protein\u2013carbohydrate interfaces. Nucleic Acids Research, 2025, 53, D387\u2013D395. Abstract<\/a><\/td><\/tr>
EurocarbDB<\/a><\/td>Al Jadda K., Porterfield M. P., Bridger R., Heiss C., Tiemeyer M., Wells L., Miller J. A., York w. S., Ranzinger R., EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data. Bioinformatics, 2015, 31, 242-245. Abstract<\/a><\/td><\/tr>
Functional Glycomics Gateway<\/a><\/td>Provider: Consortium for Functional Glycomics<\/td><\/tr>
Glyco@Expasy<\/a><\/td>Lisacek F., Bioinformatics resources for the study of glycan-mediated protein interactions. Journal of Visualized Experiment, 2022, 179, doi: 10.3791\/63356. Abstract<\/a><\/td><\/tr>
GlycomeAtlas<\/a><\/td>Konishi Y., Aoki-Kinoshita K. F., The GlycomeAtlas tool for visualizing and querying glycome data. Bioinformatics, 2012, 28, 2849-2850. Abstract<\/a><\/td><\/tr>
GlycomeDB<\/a><\/td>Ranzinger R., Herget S., von der Lieth C.W., Frank M., GlycomeDB-a unified database for carbohydrate structures. Nucleic Acids Research, 2011, 39, D373-D376. Abstract<\/a><\/td><\/tr>
Glycomics Portal<\/a><\/td>Provider: University of Georgia<\/td><\/tr>
GlycoNavi Database<\/a><\/td>Provider: The Noguchi Institute<\/td><\/tr>
GLYCOSCIENCES.de<\/a><\/td>B\u00f6hm M., Bohne-Lang A., Frank M., Loss A., Rojas-Macias M. A., L\u00fctteke T., Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update). Nucleic Acids Research, 2019, 47, D1195\u2013D1201. Abstract<\/a><\/td><\/tr>
GlyCosmos<\/a><\/td>Yamada I., Shiota M., Shinmachi D., Ono T., Tsuchiya S., Hosoda M., Fujita A., Aoki N. P., Watanabe Y., Fujita N., Angata K., Kaji H., Narimatsu H., Okuda S., Aoki-Kinoshita K. F., The GlyCosmos Portal: a unified and comprehensive web resource for the glycosciences. Nature Methods, 2020, 17, 649-650. Abstract<\/a><\/td><\/tr>
GlyTouCan<\/a><\/td>Fujita A., Aoki N. P., Shinmachi D., Matsubara M., Tsuchiya S., Shiota M., Ono T., Yamada I., Aoki-Kinoshita K. F., The international glycan repository GlyTouCan version 3.0. Nucleic Acids Research, 2021, 49, D1529\u2013D1533. Abstract<\/a><\/td><\/tr>
JCGGDB<\/a><\/td>Maeda M., Fujita N., Suzuki Y., Sawaki H., Shikanai T., Narimatsu H. JCGGDB: Japan consortium for glycobiology and glycotechnology database. Methods in Molecular Biology, 2015, 1273, 161-179. Abstract<\/a><\/td><\/tr>
KEGG glycan<\/a><\/td>Kanehisa M., Furumichi M., Sato Y., Matsuura Y., Ishiguro-Watanabe M., KEGG: biological systems database as a model of the real world. Nucleic Acids Research, 2025, 53, D672\u2013D677. Abstract<\/a><\/td><\/tr>
MCAW-DB<\/a><\/td>Hosoda M., Takahashi Y., Shiota M., Shinmachi D., Inomoto R., Higashimoto S., Aoki-Kinoshita K. F., MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns. Carbohydrate Research, 2018, 464, 44\u201356. Abstract<\/a><\/td><\/tr>
MonosaccharideDB<\/a><\/td>Campbell M. P., Ranzinger R., L\u00fctteke T., Mariethoz J., Hayes C. A., Zhang J., Akune Y., Aoki-Kinoshita K. F., Damerell D., Carta G., York W. S., Haslam S. M., Narimatsu H., Rudd P. M., Karlsson N. G., Packer N. H., Lisacek F., Toolboxes for a standardised and systematic study of glycans. BMC Bioinformatics, 2014, 15 (Suppl 1), Article No S9. Abstract<\/a><\/td><\/tr>
NCBI Glycans<\/a><\/td>Sayers E. W., Bolton E. E., Brister J. R., Canese K., Chan J., Comeau D. C., Connor R., Funk K., Kelly C., Kim S., Madej T., Marchler-Bauer A., Lanczycki C., Lathrop S., Lu Z., Thibaud-Nissen F., Murphy T., Phan L., Skripchenko Y., Tse T., Wang J., Williams R., Trawick B. W., Pruitt K. D., Sherry S. T., Database resources of the national center for biotechnology information. Nucleic Acids Research, 2022, 50, D20\u2013D26. Abstract<\/a><\/td><\/tr>
SphinGOMAP<\/a><\/td>Merrill A. H., SphinGOMAP – A web-based biosynthetic pathway map of sphingolipids and glycosphingolipids. Glycobiology, 2005, 15, 15G. Abstract<\/a><\/td><\/tr>
SugarBindDB<\/a><\/td>Mariethoz J., Khatib K., Alocci D., Campbell M. P., Karlsson N. G., Packer N. H., Mullen E. H., Lisacek F., SugarBindDB, a resource of glycan-mediated host\u2013pathogen interactions. Nucleic Acids Research, 2016, 44, D1243\u2013D1250. Abstract<\/a><\/td><\/tr>
Symbol Nomenclature for Glycans<\/a><\/td>Neelamegham S., Aoki-Kinoshita K., Bolton E., Frank M., Lisacek F., L\u00fctteke T., O’Boyle N., Packer N. H., Stanley P., Toukach P., Varki A., Woods R. J., SNFG Discussion Group, Updates to the Symbol Nomenclature for Glycans guidelines. Glycobiology, 2019, 29, 620\u2013624. Abstract<\/a><\/td><\/tr>
UniCarb-DB<\/a><\/td>Campbell M. P., Nguyen-Khuong T., Hayes C. A., Flowers S. A., Alagesan K., Kolarich D., Packer N. H., Karlsson N. G., Validation of the curation pipeline of UniCarb-DB: Building a global glycan reference MS\/MS repository. Biochimica and Biophysica Acta, Proteins and Proteomics, 2014, 1844, 108\u2013116. Abstract<\/a> 

Campbell M. P., Peterson R., Mariethoz J., Gasteiger E., Akune Y., Aoki-Kinoshita K. F., Lisacek F., Packer N. H., UniCarbKB: building a knowledge platform for glycoproteomics. Nucleic Acids Research, 2014, 42, D215\u2013D221. Abstract<\/a><\/td><\/tr>
UniCorn<\/a><\/td>Akune Y., Lin C.-H., Abrahams J. L., Zhang J., Packer N. H., Aoki-Kinoshita K. F., Campbell M. P., Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database. Carbohydrate Research, 2016, 431, 56-63. Abstract<\/a><\/td><\/tr><\/tbody><\/table><\/figure>\n","protected":false},"excerpt":{"rendered":"

Carbohydrates Bacterial CSDB Toukach P. V., Bacterial Carbohydrate Structure Database 3: principles and realization. Journal of Chemical Information and Modeling, 2011, 51, 159\u2013170. Abstract CarbBank Doubet, S.; Albersheim, P. Letter to the glyco-forum: Carbbank. Glycobiology, 1992, 2, 505. Abstract CSDB Toukach P. V., Egorova K. S., Source files of the Carbohydrate Structure Database: the way to sophisticated…<\/p>\n","protected":false},"author":3,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_lmt_disableupdate":"no","_lmt_disable":"no","_kad_post_transparent":"","_kad_post_title":"","_kad_post_layout":"left","_kad_post_sidebar_id":"sidebar-primary","_kad_post_content_style":"boxed","_kad_post_vertical_padding":"","_kad_post_feature":"","_kad_post_feature_position":"","_kad_post_header":false,"_kad_post_footer":false,"footnotes":""},"class_list":["post-97","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/97","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/users\/3"}],"replies":[{"embeddable":true,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/comments?post=97"}],"version-history":[{"count":12,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/97\/revisions"}],"predecessor-version":[{"id":877,"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/pages\/97\/revisions\/877"}],"wp:attachment":[{"href":"https:\/\/biochemia.uwm.edu.pl\/metachemibio\/wp-json\/wp\/v2\/media?parent=97"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}