NameLinkDescription
3didhttp://3did.irbbarcelona.org/index.htmlProgram for peptide-protein and protein-protein interaction prediction
AHTpinhttp://crdd.osdd.net/raghava/ahtpin/Program for prediction angiotensin-converting enzyme-inhibitory activity of peptides
ANCHORhttp://anchor.enzim.hu/Program predicting protein binding regions in proteins. Accepts peptide sequences as  queries.
AnOXPePredhttps://services.healthtech.dtu.dk/service.php?AnOXPePred-1.0Program predicting antioxidative activity of peptides
AntiAngioPredhttp://clri.res.in/subramanian/tools/antiangiopred/index.html http://crdd.osdd.net/raghava/antiangiopred/Program for prediction of antiangiogenic activity of peptides
AntiBP2http://www.imtech.res.in/raghava/antibp/Program for antibacterial activity prediction
AntiCPhttp://crdd.osdd.net/raghava/anticp/index.htmlProgram for anticancer activity prediction
AntiCP 2.0https://webs.iiitd.edu.in/raghava/anticp2/Program for anticancer activity prediction
Antimicrobial Peptide Scannerhttps://www.dveltri.com/ascan/Program predicting antimicrobial activity of protein fragments
AtbPpredhttp://thegleelab.org/AtbPpred/Program predicting antitubercular properties of peptides
ATPinthttp://www.imtech.res.in/raghava/atpint/Program searching  for residues interacting with ATP In proteins. Accepts peptide sequences as queries.
AVPpredhttp://crdd.osdd.net/servers/avppredProgram predicting antiviral properties of peptides
BBPredhttp://bbpppred.xialab.info/Program predicting crossing of peptides through blood-brain barrier
BioTrianglehttp://biotriangle.scbdd.com/Program applicable for prediction of peptide-protein interactions. Provides options accepting amino acid sequences (BioPPI) or SMILES codes (BioCPI) as  queries.
BotDBhttp://botdb.abcc.ncifcrf.gov/toxin/kiConverter.jspProgram converting IC50 values into inhibition constant for enzyme inhibitors
BTXPredhttp://www.imtech.res.in/raghava/btxpredProgram classifying peptides and proteins as bacterial toxins
CABSdockhttp://biocomp.chem.uw.edu.pl/CABSdockProgram for prediction of peptide-protein interactions
CAMPhttp://www.bicnirrh.res.in/antimicrobial/Program predicting antimicrobial activity of peptides
ClanToxhttp://www.clantox.cs.huji.ac.ilProgram classifying peptides and proteins as animal toxins
COVID-19 Docking Serverhttps://ncov.schanglab.org.cn/index.php/Server for docking peptides to COVID-19 proteins
CPPred-RFhttp://server.malab.cn/CPPred-RF/index.jspProgram for prediction of cell-penetrating properties of peptides
FADPredhttp://www.imtech.res.in/raghava/fadpred/Program for prediction of FAD-binding sites in proteins. Accepts peptide sequences as queries.
Firestarhttp://firedb.bioinfo.cnio.es/Php/FireStar.phpProgram predicting functional sites in proteins on the basis on sequence or structure. Accepts peptide sequences (>20 amino acid residues) as queries.
GalaxyPepDockhttp://galaxy.seoklab.org/cgi-bin/submit.cgi?type=PEPDOCKProgram for prediction of peptide-protein interactions
GTPBinderhttp://www.imtech.res.in/raghava/gtpbinder/Program for prediction of GTP-binding sites in proteins. Accepts peptide sequences as  queries.
HawkDockhttp://cadd.zju.edu.cn/hawkdock/Server for protein-protein docking. Accepts polypeptide structures
HemoPIhttp://crdd.osdd.net/raghava/hemopi/Program for prediction of hemolytic activity of peptides
HLPpred-Fusehttp://thegleelab.org/HLPpred-Fuse/Program for prediction of hemolytic activity of peptides
HPEPDOCKhttp://huanglab.phys.hust.edu.cn/hpepdock/Program for peptide-protein docking
iAntiTBhttp://curata14.bio.kyutech.ac.jp/iAntiTB/Program for prediction of antitubercular activity of peptides
Il4Predhttp://crdd.osdd.net/raghava/il4pred/Program for prediction of interleukin-4 inducing activity
iBitter-SCMhttp://camt.phytonanywhere.com/iBitter-SCMProgram predicting bitterness of peptides
iDPPIV-SCMhttp://camt.phytonanywhere.com/iDPPIV  Program predicting dipeptidyl peptidase  IV inhibitory activity of peptides
iUmami-SCMhttp://camt.phytonanywhere.com/iUmami-SCMProgram predicting umami taste of peptides
iQSPhttp://codes.bio/iqsp/Program predicting quorum sensing peptides
INTREPIDhttp://phylogenomics.berkeley.edu/interpid/Program for prediction of functional sites in proteins. Accepts peptide sequences as queries
KELM-CPPpredhttp://sairam.people.iitgn.ac.in/KELM-CPPpred.htmlProgram predicting  peptide ability to cell penetration
LMDIPredhttp://bicresources.jcbose.ac.in/ssaha4/lmdipred/Program predicting  peptide interactions with three the most prevalent peptides recognizing domains in proteins
mACPpredhttp://thegleelab.org/mACPpred/Program predicting anticancer activity of peptides
mAHTPredhttp://thegleelab.org/mAHTPred/Program predicting antihypertensive activity of peptides containing at least 5 amino acid residues
MetaDBSitehttp://projects.biotec.tu-dresden.de/metadbsite/, http://sysbio.zju.edu.cn/metadbsiteProgram of DNA-binding site prediction in protein sequences. Accepts peptide sequences as queries.
Meta-iAVPhttp://codes.bio/meta-iavp/Program predicting antiviral activity of peptides
MetalPredatorhttp://metalweb.cerm.unifi.it/tools/metalpredator/Program predicting iron-binding properties of proteins. Accepts peptide sequences as queries.
MODLINKhttp://sbi.imim.es/modlink/Program for prediction of protein-protein interactions. Accepts peptide sequences as  queries.
MoRFpredhttp://biomine-ws.ece.ualberta.ca/MoRFpred/index.htmlProgram predicting short disorder to order transition regions in proteins. Accepts peptide sequences as  queries.
NADbinderhttp://www.imtech.res.in/raghava/nadbinder/Program predicting NAD binding residues in proteins. Accepts peptide sequences as queries.
NeuroPIPredhttps://webs.iiitd.edu.in/raghava/neuropipred/Program predicting activity of insect peptides as neuropeptides
NTXPredhttp://www.imtech.res.in/raghava/ntxpredProgram for prediction the neurotoxic activity of peptides.
OmicTools Peptide predictionhttp://omictools.com/peptide-prediction-categoryMetaserver enabling access to programs for prediction of structure and bioactivity of peptides
PepATTRACThttp://bioserv.rpbs.univ-paris-diderot.fr/services/pepATTRACT/#overviewProgram for modeling interactions between oligopeptides (up to 20 amino acid residues) and proteins.
PepSitehttp://pepsite.embl.de/Program for prediction of  interactions between proteins and peptides
PepSite2http://pepsite2.russelllab.org/Program for prediction of  interactions between proteins and peptides
PeptideLocatorhttp://bioware.ucd.ie/~compass/biowareweb/Program searching for bioactive fragments within protein sequences
PeptideMinehttp://caps.ncbs.res.in/peptidemine/Program searching for peptides interacting with individual proteins
PeptideRankerhttp://bioware.ucd.ie/~compass/biowareweb/Program for prediction various activities of peptides
Peptiderivehttp://rosie.rosettacommons.org/peptideriveProgram for prediction of peptides inhibiting protein-protein interactions
PIP-ELhttp://thegleelab.org/PIP-EL/Program predicting pro-inflammatory properties of peptides and proteins
PIPER-FlexPepDockhttp://piperfpd.furmanlab.cs.huji.ac.il/Program for peptide-protein docking
PiRaNhAwww.bioinformatics.sussex.ac.uk/PIRANHA http://piranha.protein.osaka-u.ac.jpProgram predicting RNA binding sites in proteins. Accepts peptide sequences as queries.
PlayMoleculehttp://www.playmolecule.org/Web-tool for prediction of the interactions between proteins and small molecules including peptides. Accepts small molecule structures in sdf format.
PreAIPhttp://kurata14.bio.kyutech.ac.jp/PreAIP/Program predicting anti-inflammatory activity of peptides
Predicting AMPs from Peptideshttp://amp.biosino.org/Program predicting antimicrobial properties of peptides.
ProInflamhttp://metagenomics.iiserb.ac.in/proinflam/Program predicting pro-inflammatory properties of peptides and proteins
ProIn-Fusehttp://kurata14.bio.kyutech.ac.jp/ProIn-Fuse/Program predicting pro-inflammatory activity of peptides
ProteinsPlushttp://proteinsplus.zbh.uni-hamburg.de/Program predicting interactions between small molecules (including peptides) and proteins. Accepts ligand structures in .svg format.
RIPPMinerhttp://www.nii.ac.in/~priyesh/lantipepDB/new_predictions/index.phpProgram predicting occurrence of ribosomally synthesized and post-translationally modified peptidesin protein sequences.
RNAPredhttp://www.imtech.res.in/raghava/rnapred/Program predicting RNA binding sites in proteins. Accepts peptide sequences as a queries.
Spot-peptidehttp://sparks-lab.org/tom/SPOT-peptide/Program predicting peptide-protein interactions.
SwissDockhttp://www.swissdock.ch/Program for modeling protein-ligand interactions. Accepts peptide structures in Sybyl.mol2 format.
THPephttp://codes.bio/thpep/Program for prediction tumor homing peptides
ToxinPredhttp://crdd.osdd.net/raghava/toxinpred/Program for peptide toxicity prediction.