NameLinkDescription
CMDhttp://birg4.fbb.utm.my/cmd/Database of cysteine motifs in proteins
CompariMotifhttp://bioinformatics.ucd.ie/shields/software/comparimotif/Program comparing sequence motifs in proteins and/or peptides
ELMhttp://elm.eu.org/Program searching for functional, linear motifs in protein sequences. Accepts peptide sequences as a queries
Fit3Dhttps://biosciences.hs-mittweida.de/fit3d/homeProgram finding structural motifs in proteins
Gibbs Motif Samplerhttp://ccmbweb.ccv.brown.edu/gibbs/gibbs.htmlProgram identifying conserved motifs in protein sequences. Accepts peptide sequences as a queries
GO Motifhttps://www.gomotif.ca/gomotif/Program finding associations between motifs and biological functions of proteins.
HH-MOTiF http://hh-motif.biochem.mpg.de/search/Program searching for sequence motifs.
HSMotifDiscoverhttps://hsmotifdiscover.shinyapps.io/HSMotifDiscover_ShinyApp/Program for identification of motifs in sequences of biopolymers (nucleic acids, proteins, peptides and polysaccharides), composed of non-single-letter elements
LabWorm Protein domains, motif & classhttps://labworm.com/category/protein-peptide/protein-domain-motif-classWebsite providing access designed for work with protein sequence motifs
MEME Suitehttps://meme-suite.org/meme/index.htmlWebsite providing access to programs constructing and handling sequence motifs. Website contains programs constructing motifs (MEME, GLAM2), screening protein sequence databases to find constructed  motifs (MAST, GLAM2Scan, FIMO), comparison of motifs (TOMTOM) and motifs association in Gene Ontology terms (GOMO). Programs MEME and GLAM2 accept peptide sequences as a queries
Minimotif Minerhttp://mnm.engr.uconn.edu/MNM/SMSSearchServletDatabase of motifs and program finding motifs in amino acid sequences. Program accepts peptide sequences as a queries
NNAlignhttp://www.cbs.dtu.dk/services/NNAlign-2.0Program searching for sequence motifs in peptide data
Pratthttp://www.ebi.ac.uk/prattProgram finding sequence motifs in peptides or proteins
REMUShttp://bioinfo.life.nthu.edu.tw/REMUS
http://spider.cs.ntou.edu.tw/BioTools/REMUS		Program searching for unique motifs in protein and peptides sequences, complementary to programs constructing consensus sequences, useful for highlighting differences between proteins or peptides.
SCANMOThttp://caps.ncbs.res.in/scanmot/scanmot.htmlProgram searching for characteristic motifs in protein sequences. Accepts peptide motifs as queries
Seq2Logohttps://services.healthtech.dtu.dk/services/Seq2Logo-2.0/Program for finding amino acid binding motifs
SLIMFinderhttp://www.slimsuite.unsw.edu.au/servers/slimfinder.phpProgram for motif finding in protein and peptide sequences
SLIMSearchhttp://bioware.ucd.ie/~compass/Server_pages/slimsearch2.htmlProgram for motif finding in protein and peptide sequences
SLIMSuitehttp://shiny.slimsuite.unsw.edu.au/SLiMSuite/Website providing access for programs aimed on motif construction and searching
TOPDOMhttps://topdom.unitmp.org/Database of conserved domains and motifs in proteins
WebLogohttp://weblogo.berkeley.edu/logo.cgiProgram for construction of sequence logo on the basis of multiple alignments