Name | Link | Description |
BENZ WS | https://benzdb.biocomp.unibo.it/ | Program assigning protein to enzyme class on the basis of sequence |
BRENDA | http://www.brenda-enzymes.org/ | Database of enzymes containing the information about optimal conditions of enzyme action |
CaspNeuroD | http://caspdb.sanfordburnham.org/caspneurod.php | Database of predicted caspase cleavage sites in human proteins, associated with neurodegenerative diseases |
CutDB | http://cutdb.burnham.org | Database of specificity of less-known endopeptidases. |
DeepCleave | https://deepcleave.erc.monash.edu/ | Program predicting specificity of caspases. |
Degradome database | http://degradome.uniovi.es | Database of mammalian (e.g. human) proteolytic enzymes |
ECPred | http://ecpred.kansil.org/ | Program for enzyme function prediction |
EnzymeDetector | http://enzymedetector.tu-bs.de/ | Database providing overview of the available enzyme function annotations (including proteolytic ones) for a genome of interest |
EnzymeMiner | https://loschmidt.chemi.muni.cz/enzymeminer/ | Program predicting enzymatic (e.g. proteolytic) activity of proteins. |
Enzyme Predictor | http://bioware.ucd.ie/~enzpred/Enzpred.php | Program predicting specificity of proteolytic enzymes |
ExplorEnz | http://www.enzyme-database.org | Database of enzymes e.g. proteolytic |
FunTree | http://www.ebi.ac.uk/thornton-srv/databases/FunTree/ | Database designed for classification of enzyme superfamilies including proteolytic enzymes |
HIVcleave | http://chou.med.harvard.edu/bioinf/HIV/ | Program designed for prediction of HIV proteases cleavage sites in proteins and peptides |
MEROPS | http://merops.sanger.ac.uk/ | Database of proteolytic enzymes |
NeuroPred | http://neuroproteomics.scs.uiuc.edu/neuropred.html | Prediction of sites of cleavage leading to the release of neuropeptides. |
Open Targets | https://www.targetvalidation.org/ | Database providing information about association of enzymes (including proteolytic) with diseases |
PCPS | http://imed.med.ucm.es/Tools/pcps/ | Program predicting proteasome cleavage sites |
PCSS | https://www.targetvalidation.org/ | Database providing information about association of enzymes (including proteolytic) with diseases |
PepCleave II | http://peptibase.cs.biu.ac.il/PepCleave_II/ | Program predicting peptides resulting from proteasome cleavage |
Peptide-Cutter | http://www.expasy.org/tools/peptidecutter/ | Program for proteolysis simulation. |
PeptideMap | http://prowl.rockefeller.edu/prowl/peptidemap.html | Program for proteolysis simulation and calculation of masses of resulting peptides |
PMAP | http://www.proteolysis.org | Database of proteolytic events |
POPS | http://pops.csse.monash.edu.au/pops-cgi/index.php | Prediction of proteolytic cleavage sites |
Protease Classification System | http://pcal.biosino.org/protease_classification.html | Classification of proteolytic enzymes on the basis of amino acid sequences |
Promis | http://web.issb.genopole.fr/~faulon/promis.php | Program predicting enzyme promiscuity based on molecular signatures. May be applied e.g. to proteolytic enzymes |
Proteolytic Enzymes Database | http://www.proteolyticenzymes.info | Database of proteolytic enzymes |
ProtIdent | http://www.csbio.sjtu.edu.cn/bioinf/Protease/ | Program classifying uncharacterized proteins as proteases or non-proteases and predicting possible action mechanism on the basis of amino acid sequences |
SitePrediction | http://www.dmbr.ugent.be/prx/bioit2-public/SitePrediction/ | Program predicting sites suceptible for proteolytic cleavage |
SpirPep | http://spirpepapp.sbi.kmutt.ac.th/SpirPep/ | Program for proteolysis simulation linked to metabase of bioactive peptides |