| Name | Link | Description | 
| AntiCP | http://crdd.osdd.net/raghava/anticp/index.html | Program for design of anticancer peptides | 
| Bioinformatics Tools Online | http://210.60.98.19/ | Website providing access to programs for prediction protein and peptide properties change upon point mutation | 
| CellPPD | http://crdd.osdd.net/raghava/cellppd/ | Program for design of cell-penetrating peptides | 
| CycloPs | http://bioware.ucd.ie/~cyclops/cgi-bin/webpep.cgi | Program supporting design of cyclic peptides. Program translates amino acid sequences into SMILES code and predicts some molecular features and physico-chemical properties. | 
| GLUE-IT | http://pbil.univ-lyon1.fr/ | Server with the access to many programs able to process peptide sequences: e.g. constructing multiple alignments between sequences, secondary structure prediction calculating amino acids composition and profiles of physico-chemical features | 
| D-Peptide Builder | http://dpeptidebuilder.quimica.unam.mx:4000/ | Program for design of combinatorial libraries of peptides. | 
| Il-10Pred | http://crdd.osdd.net/raghava/IL-10pred/ | Program for design interleukin-10-inducing  peptides | 
| PepComposer | http://cassandra.med.uniroma1.it/pepcomposer/webserver | Program supporting design of peptides binding to given protein surface | 
| PepControls | http://bioware.ucd.ie/~cyclops/Fergal/tags/PepControls_release_versions/1.3/control_pep_website/control_peptides.html | Program for design of peptides acting as a controls in experiments concerning properties | 
| PeptideMine | http://caps.ncbs.res.in/peptidemine/ | Program supporting design of peptides interacting with proteins | 
| MOSAIC | http://hiv.lanl.gov/content/sequence/MOSAIC/ | Program for protein or peptide vaccine design | 
| rMotifGen | http://bioinformatics.louisville.edu/brg/rMotifGen/ | Program for design random DNA, protein or peptide containing characteristic motifs | 
| TumorHPD | http://crdd.osdd.net/raghava/tumorhpd/ | Program for tumor homing peptide design |