Carbohydrates

Bacterial CSDBToukach P. V., Bacterial Carbohydrate Structure Database 3: principles and realization. Journal of Chemical Information and Modeling, 2011, 51, 159–170. Abstract
CarbBankDoubet, S.; Albersheim, P. Letter to the glyco-forum: Carbbank. Glycobiology, 1992, 2, 505. Abstract
CSDBToukach P. V., Egorova K. S., Source files of the Carbohydrate Structure Database: the way to sophisticated analysis of natural glycans. Scientific Data, 2022, 9, Article No 131. Abstract
Cyclo-libMixcoha E., Rosende R., Garcia-Fandino R., Piñeiro Á., Cyclo-lib: a database of computational molecular dynamics simulations of cyclodextrins. Bioinformatics, 2016, 32, 3371-3373. Abstract
EurocarbDBAl Jadda K., Porterfield M. P., Bridger R., Heiss C., Tiemeyer M., Wells L., Miller J. A., York w. S., Ranzinger R., EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data. Bioinformatics, 2015, 31, 242-245. Abstract
Functional Glycomics GatewayProvider: Consortium for Functional Glycomics
GlycomeAtlasKonishi Y., Aoki-Kinoshita K. F., The GlycomeAtlas tool for visualizing and querying glycome data. Bioinformatics, 2012, 28, 2849-2850. Abstract
GlycomeDBRanzinger R., Herget S., von der Lieth C.W., Frank M., GlycomeDB-a unified database for carbohydrate structures. Nucleic Acids Research, 2011, 39, D373-D376. Abstract
Glycomics PortalProvider: University of Georgia
GlycoNavi DatabaseProvider: The Noguchi Institute
GLYCOSCIENCES.deBöhm M., Bohne-Lang A., Frank M., Loss A., Rojas-Macias M. A., Lütteke T., Glycosciences.DB: an annotated data collection linking glycomics and proteomics data (2018 update). Nucleic Acids Research, 2019, 47, D1195–D1201. Abstract
GlyTouCanFujita A., Aoki N. P., Shinmachi D., Matsubara M., Tsuchiya S., Shiota M., Ono T., Yamada I., Aoki-Kinoshita K. F., The international glycan repository GlyTouCan version 3.0. Nucleic Acids Research, 2021, 49, D1529–D1533. Abstract
JCGGDBMaeda M., Fujita N., Suzuki Y., Sawaki H., Shikanai T., Narimatsu H. JCGGDB: Japan consortium for glycobiology and glycotechnology database. Methods in Molecular Biology, 2015, 1273, 161-179. Abstract
KEGG glycanKanehisa M., Furumichi M., Sato Y., Ishiguro-Watanabe M., Tanabe M., KEGG: integrating viruses and cellular organisms. Nucleic Acids Research, 2021, 49, D545–D551. Abstract
MCAW-DBHosoda M., Takahashi Y., Shiota M., Shinmachi D., Inomoto R., Higashimoto S., Aoki-Kinoshita K. F., MCAW-DB: A glycan profile database capturing the ambiguity of glycan recognition patterns. Carbohydrate Research, 2018, 464, 44–56. Abstract
MonosaccharideDBCampbell M. P., Ranzinger R., Lütteke T., Mariethoz J., Hayes C. A., Zhang J., Akune Y., Aoki-Kinoshita K. F., Damerell D., Carta G., York W. S., Haslam S. M., Narimatsu H., Rudd P. M., Karlsson N. G., Packer N. H., Lisacek F., Toolboxes for a standardised and systematic study of glycans. BMC Bioinformatics, 2014, 15 (Suppl 1), Article No S9. Abstract
NCBI GlycansSayers E. W., Bolton E. E., Brister J. R., Canese K., Chan J., Comeau D. C., Connor R., Funk K., Kelly C., Kim S., Madej T., Marchler-Bauer A., Lanczycki C., Lathrop S., Lu Z., Thibaud-Nissen F., Murphy T., Phan L., Skripchenko Y., Tse T., Wang J., Williams R., Trawick B. W., Pruitt K. D., Sherry S. T., Database resources of the national center for biotechnology information. Nucleic Acids Research, 2022, 50, D20–D26. Abstract
SphinGOMAPMerrill A. H., SphinGOMAP – A web-based biosynthetic pathway map of sphingolipids and glycosphingolipids. Glycobiology, 2005, 15, 15G. Abstract
SugarBindDBMariethoz J., Khatib K., Alocci D., Campbell M. P., Karlsson N. G., Packer N. H., Mullen E. H., Lisacek F., SugarBindDB, a resource of glycan-mediated host–pathogen interactions. Nucleic Acids Research, 2016, 44, D1243–D1250. Abstract
Symbol Nomenclature for GlycansNeelamegham S., Aoki-Kinoshita K., Bolton E., Frank M., Lisacek F., Lütteke T., O’Boyle N., Packer N. H., Stanley P., Toukach P., Varki A., Woods R. J., SNFG Discussion Group, Updates to the Symbol Nomenclature for Glycans guidelines. Glycobiology, 2019, 29, 620–624. Abstract
UniCarb-DBCampbell M. P., Nguyen-Khuong T., Hayes C. A., Flowers S. A., Alagesan K., Kolarich D., Packer N. H., Karlsson N. G., Validation of the curation pipeline of UniCarb-DB: Building a global glycan reference MS/MS repository. Biochimica and Biophysica Acta, Proteins and Proteomics, 2014, 1844, 108–116. Abstract Campbell M. P., Peterson R., Mariethoz J., Gasteiger E., Akune Y., Aoki-Kinoshita K. F., Lisacek F., Packer N. H., UniCarbKB: building a knowledge platform for glycoproteomics. Nucleic Acids Research, 2014, 42, D215–D221. Abstract
UniCornAkune Y., Lin C.-H., Abrahams J. L., Zhang J., Packer N. H., Aoki-Kinoshita K. F., Campbell M. P., Comprehensive analysis of the N-glycan biosynthetic pathway using bioinformatics to generate UniCorn: A theoretical N-glycan structure database. Carbohydrate Research, 2016, 431, 56-63. Abstract