Gene expression regulators

ChemPertZheng M., Okawa S., Bravo M., Chen F., Martínez-Chantar M.-L., del Sol A., ChemPert: mapping between chemical perturbation and transcriptional response for non-cancer cells. Nucleic Acids Research, 2023, 51, D877–D889. Abstract
DGIdbFreshour S. L., Kiwala S., Cotto K. C., Coffman A. C., McMichael J. F., Song J. J., Griffith M., Griffith O. L., Wagner A. H., Integration of the Drug–Gene Interaction Database (DGIdb 4.0) with open crowdsource efforts. Nucleic Acids Research, 2021, 49, D1144–D1151. Abstract
Drug-PathZeng H., Qiu C., Cui Q., Drug-Path: a database for drug-induced pathways. Database, 2015, Article No bav061. Abstract
EpiDBaseLoharch S., Bhutani I., Jain K., Gupta P., Sahoo D. K., Parkesh R., EpiDBase: a manually curated database for small molecule modulators of epigenetic landscape. Database, 2015, Article No bav013. Abstract
EWASdbLiu D., Zhao L., Wang Z., Zhou X., Fan X., Li Y., Xu J., Hu S., Niu M., Song X., Li Y., Zuo L., Lei C., Zhang M., Tang G., Huang M., Zhang N., Duan L., Lv H., Zhang M., Li J., Xu L., Kong F., Feng R., Jiang Y., EWASdb: epigenome-wide association study database. Nucleic Acids Research, 2019, 47, D989–D993. Abstract
HDACiDBMurugan K., Sangeetha S., Ranjitha S., Vimala A., Al-Sohaibani S., Rameshkumar G., HDACiDB: a database for histone deacetylase inhibitors. Drug Design, Development and Therapy, 2015, 9, 2257–2264. Abstract
HEDDQi Y., Wang D., Wang D., Jin T., Yang L., Wu H., Li Y., Zhao J., Du F., Song M., Wang R., HEDD: the human epigenetic drug database. Database, 2016, Article No baw159. Abstract
HEMDHuang Z., Jiang H., Liu X., Chen Y., Wong J., Wang Q., Huang W., Shi T., Zhang J., HEMD: an integrated tool of human epigenetic enzymes and chemical modulators for therapeutics. PLoS ONE, 2012, 7, Article No e39917. Abstract
HerDingChoi W., Choi C.-H., Kim Y. R., Kim S.-J., Na C.-S., Lee H., HerDing: herb recommendation system to treat diseases using genes and chemicals. Database, 2016, Article No baw011. Abstract
HIPHOPLee A. Y., St.Onge R. P., Proctor M. J., Wallace I. M., Nile A. H., Spagnuolo P. A., Jitkova Y., Gronda M., Wu Y., Kim M. K., Cheung-Ong K., Torres N. P., Spear E. D., Han M. K. L., Schlecht U., Suresh S., Duby G., Heisler L. E., Surendra A., Fung E., Urbanus M. L., Gebbia M., Lissina E., Miranda M., Chiang J. H., Aparicio A. M., Zeghouf M., Davis R. W., Cherfils J., Boutry M., Kaiser C. A., Cummins C. L., Trimble W. S., Brown G. W., Schimmer A. D., Bankaitis V. A., Nislow C., Bader G. D., Giaever G., Mapping the cellular response to small molecules using chemogenomic fitness signatures. Science, 2014, 344(6180), 208-211. Abstract
NALDBMishra S. K., Kumar A., NALDB: nucleic acid ligand database for small molecules targeting nucleic acid. Database, 2016, Article No baw002. Abstract
SM2miRLiu X., Wang S., Meng F., Wang J., Zhang Y., Dai E., Yu X., Li X., Jiang W., SM2miR: a database of the experimentally validated small molecules’ effects on microRNA expression. Bioinformatics, 2013, 29, 409-411. Abstract
ToxDBHardt C., Beber M. E., Rasche A., Kamburov A., Hebels D. G., Kleinjans J. C., Herwig R., ToxDB: pathway-level interpretation of drug-treatment data. Database, 2016, Article No baw052. Abstract
ToxygatesNyström-Persson J., Igarashi Y., Ito M., Morita M., Nakatsu N., Yamada H., Mizuguchi K., 2013, Toxygates: interactive toxicity analysis on a hybrid microarray and linked data platform. Bioinformatics, 2013, 29, 3080-3086. Abstract
TR-DBHu Y., Callebert P., Vandemoortel I., Nguyen L., Audenaert D., Verschraegen L., Vandenbussche F., Van Der Straeten D., TR-DB: An open-access database of compounds affecting the ethylene-induced triple response in Arabidopsis. Plant Physiology and Biochemistry, 2014, 75, 128-137. Abstract

Last Updated on 10-01-2023 by Piotr Minkiewicz